Genomics Data

Genomic data is accepted in the MINiML format. The upload separate xml files for Platform GPL, Series GSE and the tabular Sample GSM. The data can be linked to each other using Related data.

Genomic Platform

General meta data

Term Data entry Editable Data type
SMIR ID automatic no Number
Type automatic no List
Date added automatic no Date & Time
File format automatic no text
Number of Files & Size automatic no Number
Description manual yes Text
Anatomical region manual yes Ontology list

Platform meta data

Term Data entry Editable Data type
IID automatic No Text
Title automatic No Text
Distribution automatic No Text
Technology automatic No Number
Manufacturer automatic No Text
Manufacturer protocol automatic No Text

Genomic Series

General meta data

Term Data entry Editable Data type
SMIR ID automatic no Number
Type automatic no List
Date added automatic no Date & Time
File format automatic no text
Number of Files & Size automatic no Number
Description manual yes Text
Anatomical region manual yes Ontology list

Series meta data

Term Data entry Editable Data type
IID automatic No Text
Title automatic No Text
Summary automatic No Text
Type automatic No Number
Overall design automatic No Text
Referenced samples automatic No Text

Genomic Sample

General meta data

Term Data entry Editable Data type
SMIR ID automatic no Number
Type automatic no List
Date added automatic no Date & Time
File format automatic no text
Number of Files & Size automatic no Number
Description manual yes Text
Anatomical region manual yes Ontology list

Sample meta data

Term Data entry Editable Data type
IID automatic No Text
Title automatic No Text
Description automatic No Text
Channel count automatic No Number
Data processing automatic No Text
Supllementary data automatic No Text

Supported file types