Objects

Data sets are represented as Objects on SMIR. Each object has a unique ID, a set of meta data and object permission. The object's ID is static. This allows you to link permanently to an object. Additionaly, SMIR offers to create a Digital object identifier (DOI). Please read the DOI section for details and instructions.

Link template

https://www.smir.ch/Objects/ID

Example for ID 101597

https://www.smir.ch/Objects/101597

There are different object types to represent the type of the data set. Example object types are:

  • RAW Image like CT scan, MR Images, etc..
  • Segementation of Images
  • Surface models
  • Genetic data

For a complete list check the Supported Data Section.

Object names

SMIR uses a template to replace filenames after upload. This helps to identify what type of data the object represents by just looking at the name. It also removes identification information stored in the original (local) filename. The original filename is stored but only displayed to the owner of the object.

Naming template

Template

Namespace.Anatomy.Age.Gender.Modality.ID.Filenumber.Extension

Example

SMIR.Right_scapula.56.M.OT.167141.000.stl

  • Namespace: SMIR
  • Anatomy: Right scapula
  • Age: 56
  • Gender: male
  • Modality: Other Type (OT)
  • ID: 167141
  • Extension: STereoLithography (stl)

Meta Data

General meta data

Type specific meta data

Export meta data

Meta data of an object can be exported on the detail page. Available formats:

  • SMIR API (json)
  • Dublin core (xml)

Export Meta Data

DOI

A creatd DOI button is visible for all published objects. Use it to request a DOI.

Create DOI Button

You have to confirm the DOI generation in the modal

Confirm DOI

After you confirm the request:

  1. SMIR creates a valid DOI. Visible in the File Information Section.
  2. SMIR exposed the DOI and meta data to the Registration Agency (ETH Zurich)
  3. The Registration Agency collects the data and registers the DOI with DataCite
  4. The DOI is active

Object permissions

Permission sets

Default permission

Owner change

Ech object has exactly one owner. But the owner can change (transfer) the ownership of the object(s).

  • Owner change does not affect existing permissions!
  • You will lose control over the selected objects!

Single object

  1. Open the Object's menu Object menue

  2. Select Change Owner Owner

  3. Search the new Owner and confirm the change in the modal to finish the process

Owner Confirm

Batch change

  1. Select multiple object using the checkboxes.
  2. Select Owner in the Manage selected drop-down menu

Owner

  1. Search the new Owner and confirm the change in the modal to finish the process

Owner

License

The license specifies the rights the user has after download whereas object permissions define the access to the file on SMIR.

A license is set for each object. Copyright is set as default. Please consider changing it when you prepare the object for publishing. The license file will be included in the download. A list of open source license are available. If you need a custom license please use the ticket system to send such a request.

Change license of a single object

The user can change the license in a object list view or on the object's detail page.

  1. Login
  2. Navigate to the object
  3. Click on the menu icon Object menue(list view)
  4. Select Edit license
  5. Select the license from the drop-down menu in the modal License modal
  6. Set license to change or cancel to abort

Batch license change

  1. Login
  2. Select the object and click on Manage selected and then License License batched
  3. Select the license from the drop-down menu in the modal License batch modal
  4. Set license to change/save or cancel to abort

Preview Images

SMIR generates for Images and model a set of up to 10 preview images to give a glance at the data set. Preview images are not part of the actual data you download.

Files

The actual data is not displayed/accessable on SMIR. To use the data set, download the object. However, the list of included files in an object is displayed.

Object download

Download are wrapped in a directory contains the following files and downloaded as compressed archive (zip)

  • Data files
  • Meta data file: .json
  • Readme README.md
  • SMIR citation as Bibtex: smir.bib
  • License: *License_.txt**

Object lists

Unpublished data

Published data

Browse data